A B C D E F G H I J K L M N O P R S T U V W

G

get(Object) - Method in class net.aavalla.utils.general.RetrievalAbstractMap
Returns the value of the mapping with the specified key.
get(Object) - Method in class net.aavalla.utils.general.RetrievalHashMap
Returns the value of the mapping with the specified key.
get(int, int) - Method in class net.aavalla.utils.general.VirtualMatrix
 
getAbIntersect() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getAbLabel() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getaCircleOutlineColor() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getaLabel() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getAsSupportedType(Class) - Method in class net.aavalla.utils.jobpool.parameters.DefaultFieldTypeHandler
 
getAsSupportedType(Class) - Method in interface net.aavalla.utils.jobpool.parameters.FieldTypeHandler
This function should convert a given type to a compatible type that is supported by this FieldTypeHandler.
getaTotal() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getAvailableProcessors() - Static method in class net.aavalla.utils.jobpool.JobPool
 
getbCircleOutlineColor() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getBetterPriorityJobsMustEndFirst() - Method in class net.aavalla.utils.jobpool.JobPool
 
getbLabel() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getbTotal() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getCanvasColorBG() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getCategories() - Method in class net.aavalla.utils.jobpool.Job
Returns the categories this job is a part of.
getChosenFont() - Method in class net.aavalla.utils.gui.fontchooser.FontChooserDialog
 
getChosenFont() - Method in class net.aavalla.utils.gui.fontchooser.FontChooserPanel
 
getClassPath(Class) - Static method in class net.aavalla.utils.general.FileUtils
Returns the filesystem path of given class.
getConflictingCategories() - Method in class net.aavalla.utils.jobpool.Job
Returns the categories this job conflicts with.
getDescription() - Method in class net.aavalla.utils.jobpool.parameters.FieldInstance
 
getDescription() - Method in class net.aavalla.utils.jobpool.parameters.ParameterCollection
Returns the description of this ParameterCollection
getElementType() - Method in class net.aavalla.utils.jobpool.parameters.SyncEnumSet
Returns the element type (as Class, not Type) for this set.
getEmbeddedLabelType() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getExecutionTime() - Method in class net.aavalla.utils.general.Timer
Returns the time in nanoseconds spent after this timer has started, not counting the time it's been paused.
getExecutionTime() - Method in class net.aavalla.utils.jobpool.Job
Returns execution time in nanoseconds.
getExecutionTimeInSeconds() - Method in class net.aavalla.utils.general.Timer
Returns the time in nanoseconds spent after this timer has started, not counting the time it's been paused.
getExternalLabelType() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getFailReason() - Method in class net.aavalla.utils.jobpool.JobResultEvent
 
getFastaLineType(String) - Static method in class net.aavalla.utils.general.FastaUtils
Returns the type of the given line
getFile() - Method in class net.aavalla.utils.gui.twovenn.VennExportParameters
 
getFileEOLStyle(File) - Static method in class net.aavalla.utils.general.FileUtils
Returns the EOL style used in file given as parameter
getFinalParametersForDisplay() - Method in class net.aavalla.utils.jobpool.ParameterizedJob
Returns the ParameterCollection for displaying.
getFullHtmlDescription() - Method in class net.aavalla.utils.jobpool.parameters.FieldInstance
 
getHelpID() - Method in class net.aavalla.utils.jobpool.parameters.ParameterCollection
 
getHelpURL() - Method in class net.aavalla.utils.jobpool.parameters.ParameterCollection
 
getHiddenFields() - Method in class net.aavalla.utils.jobpool.parameters.ParameterCollection
Returns a clone of the hidden fields set.
getIcon() - Method in class net.aavalla.utils.gui.docbrowser.PageInfo
 
getKey(K) - Method in class net.aavalla.utils.general.RetrievalHashMap
Returns a key from this map that equals with the key given as argument or null, if none exist.
getKey(E) - Method in class net.aavalla.utils.general.RetrievalHashSet
 
getLabelABColor() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getLabelAColor() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getLabelBColor() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getLabelBColor(Color) - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getLabelFont() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getLastError() - Method in class net.aavalla.utils.gui.docbrowser.IndexData
 
getLines() - Method in class net.aavalla.utils.jobpool.parameters.FieldInstance
 
getLineThickness() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getMarginBetween() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getMarginImage() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getMarginLabel() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getMaxConcurrencyForCategory(JobCategory) - Method in class net.aavalla.utils.jobpool.JobPool
 
getMaxDist() - Method in class net.aavalla.utils.general.VirtualMatrix
 
getMaxFontSize() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getMessage() - Method in class net.aavalla.utils.jobpool.JobPoolMessageEvent
 
getMinFontSize() - Method in class net.aavalla.utils.gui.twovenn.VennParameters
 
getName() - Method in class net.aavalla.utils.gui.docbrowser.PageInfo
 
getName() - Method in class net.aavalla.utils.jobpool.Job
Returns the name of this job.
getName() - Method in class net.aavalla.utils.jobpool.parameters.FieldInstance
 
getNewJobTreeForm(boolean) - Method in class net.aavalla.utils.jobpool.JobPool
 
getNonfinalEditableParameters() - Method in class net.aavalla.utils.gui.twovenn.VennDiagram.ExportVennImageJob
 
getNonfinalEditableParameters() - Method in class net.aavalla.utils.gui.twovenn.VennDiagram.UpdateJob
 
getNonfinalEditableParameters() - Method in class net.aavalla.utils.jobpool.ParameterizedJob
This should be overridden in derived classes.
getOwner() - Method in class net.aavalla.utils.jobpool.parameters.FieldInstance
 
getParameters() - Method in class net.aavalla.utils.gui.twovenn.VennPanel
Returns the parameters.
getParametersForModification() - Method in class net.aavalla.utils.jobpool.ParameterizedJob
Returns a ParameterCollection object to be edited before starting the Job with it.
getPausedTime() - Method in class net.aavalla.utils.general.Timer
Returns the time this timer has spent in paused state.
getPausedTimeInSeconds() - Method in class net.aavalla.utils.general.Timer
Returns the time this timer has spent in paused state.
getPrefixesForExternal() - Method in class net.aavalla.utils.gui.docbrowser.SimpleDocBrowser
 
getPriority() - Method in class net.aavalla.utils.jobpool.Job
Returns the priority of this job.
getProgress() - Method in class net.aavalla.utils.jobpool.Job
Returns the progress of this job as a number {-1, [0..100]}.
getQueuedRootJobsCount() - Method in class net.aavalla.utils.jobpool.JobPoolMessageEvent
 
getResult() - Method in class net.aavalla.utils.jobpool.JobResultEvent
 
getRunImmediateImmediately() - Method in class net.aavalla.utils.jobpool.JobPool
 
getRunningRootJobsCount() - Method in class net.aavalla.utils.jobpool.JobPoolMessageEvent
 
getRunningThreadsCount() - Method in class net.aavalla.utils.jobpool.JobPool
 
getRunningThreadsCount() - Method in class net.aavalla.utils.jobpool.JobPoolMessageEvent
 
getSource() - Method in class net.aavalla.utils.jobpool.JobResultEvent
 
getState() - Method in class net.aavalla.utils.jobpool.Job
Returns the state this job is currently in.
getStatus() - Method in class net.aavalla.utils.jobpool.Job
Returns the last job's status message reported in the Job's Job.execute() method by calling Job.reportStatus(String).
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class net.aavalla.utils.gui.docbrowser.HelpTreeRenderer
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class net.aavalla.utils.jobpool.gui.JobTreeCellRenderer
 
getType() - Method in class net.aavalla.utils.gui.twovenn.VennExportParameters
 
getType() - Method in class net.aavalla.utils.jobpool.parameters.FieldInstance
Returns the type of this field in a form that is most supported
getUnfinishedRootJobsCount() - Method in class net.aavalla.utils.jobpool.JobPool
 
getUrl() - Method in class net.aavalla.utils.gui.docbrowser.PageInfo
 
getUseRecursiveCancel() - Method in class net.aavalla.utils.jobpool.Job
 
getValue() - Method in class net.aavalla.utils.jobpool.parameters.FieldInstance
 
getValueComponent(boolean) - Method in class net.aavalla.utils.jobpool.parameters.FieldInstance
 
getValueComponentFor(Class, FieldInstance, boolean) - Method in class net.aavalla.utils.jobpool.parameters.DefaultFieldTypeHandler
 
getValueComponentFor(Class, FieldInstance, boolean) - Method in interface net.aavalla.utils.jobpool.parameters.FieldTypeHandler
This function should return a new object derived from ValueComponent, which can handle fields of the type given as parameter.
getValueType() - Method in class net.aavalla.utils.jobpool.parameters.gui.ValueComponent
 
getVennParameters() - Method in class net.aavalla.utils.gui.twovenn.VennExportParameters
 
getWaitingTime() - Method in class net.aavalla.utils.jobpool.Job
Returns the time spent waiting for other threads for data.
getX() - Method in class net.aavalla.utils.gui.twovenn.VennExportParameters
 
getY() - Method in class net.aavalla.utils.gui.twovenn.VennExportParameters
 
goBack() - Method in class net.aavalla.utils.gui.docbrowser.SimpleDocBrowser
 
goForward() - Method in class net.aavalla.utils.gui.docbrowser.SimpleDocBrowser
 

A B C D E F G H I J K L M N O P R S T U V W