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get(Object)
- Method in class net.aavalla.utils.general.
RetrievalAbstractMap
Returns the value of the mapping with the specified key.
get(Object)
- Method in class net.aavalla.utils.general.
RetrievalHashMap
Returns the value of the mapping with the specified key.
get(int, int)
- Method in class net.aavalla.utils.general.
VirtualMatrix
getAbIntersect()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getAbLabel()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getaCircleOutlineColor()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getaLabel()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getAsSupportedType(Class)
- Method in class net.aavalla.utils.jobpool.parameters.
DefaultFieldTypeHandler
getAsSupportedType(Class)
- Method in interface net.aavalla.utils.jobpool.parameters.
FieldTypeHandler
This function should convert a given type to a compatible type that is supported by this FieldTypeHandler.
getaTotal()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getAvailableProcessors()
- Static method in class net.aavalla.utils.jobpool.
JobPool
getbCircleOutlineColor()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getBetterPriorityJobsMustEndFirst()
- Method in class net.aavalla.utils.jobpool.
JobPool
getbLabel()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getbTotal()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getCanvasColorBG()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getCategories()
- Method in class net.aavalla.utils.jobpool.
Job
Returns the categories this job is a part of.
getChosenFont()
- Method in class net.aavalla.utils.gui.fontchooser.
FontChooserDialog
getChosenFont()
- Method in class net.aavalla.utils.gui.fontchooser.
FontChooserPanel
getClassPath(Class)
- Static method in class net.aavalla.utils.general.
FileUtils
Returns the filesystem path of given class.
getConflictingCategories()
- Method in class net.aavalla.utils.jobpool.
Job
Returns the categories this job conflicts with.
getDescription()
- Method in class net.aavalla.utils.jobpool.parameters.
FieldInstance
getDescription()
- Method in class net.aavalla.utils.jobpool.parameters.
ParameterCollection
Returns the description of this ParameterCollection
getElementType()
- Method in class net.aavalla.utils.jobpool.parameters.
SyncEnumSet
Returns the element type (as Class, not Type) for this set.
getEmbeddedLabelType()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getExecutionTime()
- Method in class net.aavalla.utils.general.
Timer
Returns the time in nanoseconds spent after this timer has started, not counting the time it's been paused.
getExecutionTime()
- Method in class net.aavalla.utils.jobpool.
Job
Returns execution time in nanoseconds.
getExecutionTimeInSeconds()
- Method in class net.aavalla.utils.general.
Timer
Returns the time in nanoseconds spent after this timer has started, not counting the time it's been paused.
getExternalLabelType()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getFailReason()
- Method in class net.aavalla.utils.jobpool.
JobResultEvent
getFastaLineType(String)
- Static method in class net.aavalla.utils.general.
FastaUtils
Returns the type of the given line
getFile()
- Method in class net.aavalla.utils.gui.twovenn.
VennExportParameters
getFileEOLStyle(File)
- Static method in class net.aavalla.utils.general.
FileUtils
Returns the EOL style used in file given as parameter
getFinalParametersForDisplay()
- Method in class net.aavalla.utils.jobpool.
ParameterizedJob
Returns the ParameterCollection for displaying.
getFullHtmlDescription()
- Method in class net.aavalla.utils.jobpool.parameters.
FieldInstance
getHelpID()
- Method in class net.aavalla.utils.jobpool.parameters.
ParameterCollection
getHelpURL()
- Method in class net.aavalla.utils.jobpool.parameters.
ParameterCollection
getHiddenFields()
- Method in class net.aavalla.utils.jobpool.parameters.
ParameterCollection
Returns a clone of the hidden fields set.
getIcon()
- Method in class net.aavalla.utils.gui.docbrowser.
PageInfo
getKey(K)
- Method in class net.aavalla.utils.general.
RetrievalHashMap
Returns a key from this map that equals with the key given as argument or null, if none exist.
getKey(E)
- Method in class net.aavalla.utils.general.
RetrievalHashSet
getLabelABColor()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getLabelAColor()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getLabelBColor()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getLabelBColor(Color)
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getLabelFont()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getLastError()
- Method in class net.aavalla.utils.gui.docbrowser.
IndexData
getLines()
- Method in class net.aavalla.utils.jobpool.parameters.
FieldInstance
getLineThickness()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getMarginBetween()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getMarginImage()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getMarginLabel()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getMaxConcurrencyForCategory(JobCategory)
- Method in class net.aavalla.utils.jobpool.
JobPool
getMaxDist()
- Method in class net.aavalla.utils.general.
VirtualMatrix
getMaxFontSize()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getMessage()
- Method in class net.aavalla.utils.jobpool.
JobPoolMessageEvent
getMinFontSize()
- Method in class net.aavalla.utils.gui.twovenn.
VennParameters
getName()
- Method in class net.aavalla.utils.gui.docbrowser.
PageInfo
getName()
- Method in class net.aavalla.utils.jobpool.
Job
Returns the name of this job.
getName()
- Method in class net.aavalla.utils.jobpool.parameters.
FieldInstance
getNewJobTreeForm(boolean)
- Method in class net.aavalla.utils.jobpool.
JobPool
getNonfinalEditableParameters()
- Method in class net.aavalla.utils.gui.twovenn.
VennDiagram.ExportVennImageJob
getNonfinalEditableParameters()
- Method in class net.aavalla.utils.gui.twovenn.
VennDiagram.UpdateJob
getNonfinalEditableParameters()
- Method in class net.aavalla.utils.jobpool.
ParameterizedJob
This should be overridden in derived classes.
getOwner()
- Method in class net.aavalla.utils.jobpool.parameters.
FieldInstance
getParameters()
- Method in class net.aavalla.utils.gui.twovenn.
VennPanel
Returns the parameters.
getParametersForModification()
- Method in class net.aavalla.utils.jobpool.
ParameterizedJob
Returns a ParameterCollection object to be edited before starting the Job with it.
getPausedTime()
- Method in class net.aavalla.utils.general.
Timer
Returns the time this timer has spent in paused state.
getPausedTimeInSeconds()
- Method in class net.aavalla.utils.general.
Timer
Returns the time this timer has spent in paused state.
getPrefixesForExternal()
- Method in class net.aavalla.utils.gui.docbrowser.
SimpleDocBrowser
getPriority()
- Method in class net.aavalla.utils.jobpool.
Job
Returns the priority of this job.
getProgress()
- Method in class net.aavalla.utils.jobpool.
Job
Returns the progress of this job as a number {-1, [0..100]}.
getQueuedRootJobsCount()
- Method in class net.aavalla.utils.jobpool.
JobPoolMessageEvent
getResult()
- Method in class net.aavalla.utils.jobpool.
JobResultEvent
getRunImmediateImmediately()
- Method in class net.aavalla.utils.jobpool.
JobPool
getRunningRootJobsCount()
- Method in class net.aavalla.utils.jobpool.
JobPoolMessageEvent
getRunningThreadsCount()
- Method in class net.aavalla.utils.jobpool.
JobPool
getRunningThreadsCount()
- Method in class net.aavalla.utils.jobpool.
JobPoolMessageEvent
getSource()
- Method in class net.aavalla.utils.jobpool.
JobResultEvent
getState()
- Method in class net.aavalla.utils.jobpool.
Job
Returns the state this job is currently in.
getStatus()
- Method in class net.aavalla.utils.jobpool.
Job
Returns the last job's status message reported in the Job's
Job.execute()
method by calling
Job.reportStatus(String)
.
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean)
- Method in class net.aavalla.utils.gui.docbrowser.
HelpTreeRenderer
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean)
- Method in class net.aavalla.utils.jobpool.gui.
JobTreeCellRenderer
getType()
- Method in class net.aavalla.utils.gui.twovenn.
VennExportParameters
getType()
- Method in class net.aavalla.utils.jobpool.parameters.
FieldInstance
Returns the type of this field in a form that is most supported
getUnfinishedRootJobsCount()
- Method in class net.aavalla.utils.jobpool.
JobPool
getUrl()
- Method in class net.aavalla.utils.gui.docbrowser.
PageInfo
getUseRecursiveCancel()
- Method in class net.aavalla.utils.jobpool.
Job
getValue()
- Method in class net.aavalla.utils.jobpool.parameters.
FieldInstance
getValueComponent(boolean)
- Method in class net.aavalla.utils.jobpool.parameters.
FieldInstance
getValueComponentFor(Class, FieldInstance, boolean)
- Method in class net.aavalla.utils.jobpool.parameters.
DefaultFieldTypeHandler
getValueComponentFor(Class, FieldInstance, boolean)
- Method in interface net.aavalla.utils.jobpool.parameters.
FieldTypeHandler
This function should return a new object derived from ValueComponent, which can handle fields of the type given as parameter.
getValueType()
- Method in class net.aavalla.utils.jobpool.parameters.gui.
ValueComponent
getVennParameters()
- Method in class net.aavalla.utils.gui.twovenn.
VennExportParameters
getWaitingTime()
- Method in class net.aavalla.utils.jobpool.
Job
Returns the time spent waiting for other threads for data.
getX()
- Method in class net.aavalla.utils.gui.twovenn.
VennExportParameters
getY()
- Method in class net.aavalla.utils.gui.twovenn.
VennExportParameters
goBack()
- Method in class net.aavalla.utils.gui.docbrowser.
SimpleDocBrowser
goForward()
- Method in class net.aavalla.utils.gui.docbrowser.
SimpleDocBrowser
Overview
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